Detailed information of SNP:
|
SNP ID:
sf0610923795(Gbrowse)
Chromosome: chr06 Position: 10923795 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 75.72% | 24.28% |
| All Indica | 798 | 77.19% | 22.81% |
| All Japonica | 497 | 72.03% | 27.97% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 62.99% | 37.01% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610923795 | T->C | INTERGENIC | None |