Detailed information of SNP:
|
SNP ID:
sf0610927549(Gbrowse)
Chromosome: chr06 Position: 10927549 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.26% | 13.74% |
| All Indica | 799 | 80.10% | 19.90% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610927549 | A->T | INTERGENIC | None |