Detailed information of SNP:
|
SNP ID:
sf0610928435(Gbrowse)
Chromosome: chr06 Position: 10928435 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 87.15% | 12.85% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610928435 | A->G | INTERGENIC | None |