Detailed information of SNP:
|
SNP ID:
sf0610931392(Gbrowse)
Chromosome: chr06 Position: 10931392 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.88% | 27.12% |
| All Indica | 793 | 79.82% | 20.18% |
| All Japonica | 497 | 59.96% | 40.04% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 210 | 67.62% | 32.38% |
| Indica Intermediate | 208 | 73.56% | 26.44% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610931392 | A->G | LOC_Os06g19210(LOC_Os06g19210.1) | Non-Synonymous SNP |