Detailed information of SNP:
|
SNP ID:
sf0610954363(Gbrowse)
Chromosome: chr06 Position: 10954363 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 84.85% | 15.15% |
| All Indica | 795 | 79.62% | 20.38% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 207 | 73.91% | 26.09% |
| Temperate Japonica | 333 | 92.79% | 7.21% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610954363 | A->G | INTERGENIC | None |