Detailed information of SNP:
|
SNP ID:
sf0610956762(Gbrowse)
Chromosome: chr06 Position: 10956762 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 92.17% | 7.83% |
| All Indica | 727 | 86.93% | 13.07% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 56 | 100.00% | 0.00% |
| Indica I | 357 | 91.88% | 8.12% |
| Indica II | 181 | 79.56% | 20.44% |
| Indica Intermediate | 189 | 84.66% | 15.34% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610956762 | C->T | LOC_Os06g19260(LOC_Os06g19260.1) | UTR_3_PRIME |