Detailed information of SNP:
|
SNP ID:
sf0610964159(Gbrowse)
Chromosome: chr06 Position: 10964159 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.96% | 42.04% |
| All Indica | 794 | 88.54% | 11.46% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 335 | 22.69% | 77.31% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610964159 | T->C | INTERGENIC | None |