Detailed information of SNP:
|
SNP ID:
sf0610973809(Gbrowse)
Chromosome: chr06 Position: 10973809 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 50.32% | 49.68% |
| All Indica | 797 | 17.19% | 82.81% |
| All Japonica | 490 | 95.71% | 4.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 14.44% | 85.56% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 210 | 27.62% | 72.38% |
| Temperate Japonica | 328 | 96.04% | 3.96% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610973809 | C->A | LOC_Os06g19300(LOC_Os06g19300.1) | Synonymous |