Detailed information of SNP:
|
SNP ID:
sf0610976107(Gbrowse)
Chromosome: chr06 Position: 10976107 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.49% | 49.51% |
| All Indica | 799 | 75.97% | 24.03% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610976107 | T->C | LOC_Os06g19300(LOC_Os06g19300.1) | INTRON |