Detailed information of SNP:
|
SNP ID:
sf0611001116(Gbrowse)
Chromosome: chr06 Position: 11001116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 81.16% | 18.84% |
| All Indica | 767 | 66.49% | 33.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 43.34% | 56.66% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 201 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611001116 | G->A | INTERGENIC | None |