Detailed information of SNP:
|
SNP ID:
sf0611003238(Gbrowse)
Chromosome: chr06 Position: 11003238 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.66% | 25.34% |
| All Indica | 798 | 58.15% | 41.85% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611003238 | C->T | LOC_Os06g19340(LOC_Os06g19340.1) | Non-Synonymous SNP |