Detailed information of SNP:
|
SNP ID:
sf0611004858(Gbrowse)
Chromosome: chr06 Position: 11004858 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.01% | 5.99% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611004858 | G->A | LOC_Os06g19350(LOC_Os06g19350.1) | Non-Synonymous SNP |