Detailed information of SNP:
|
SNP ID:
sf0611005879(Gbrowse)
Chromosome: chr06 Position: 11005879 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.00% | 25.00% |
| All Indica | 798 | 58.40% | 41.60% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611005879 | G->T | LOC_Os06g19350(LOC_Os06g19350.1) | Non-Synonymous SNP |