Detailed information of SNP:
|
SNP ID:
sf0611041231(Gbrowse)
Chromosome: chr06 Position: 11041231 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 798 | 42.61% | 57.39% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611041231 | A->C | LOC_Os06g19390(LOC_Os06g19390.1) | INTRON |