Detailed information of SNP:
|
SNP ID:
sf0611060200(Gbrowse)
Chromosome: chr06 Position: 11060200 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.86% | 32.14% |
| All Indica | 799 | 47.81% | 52.19% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611060200 | G->A | LOC_Os06g19410(LOC_Os06g19410.1) | INTRON |