Detailed information of SNP:
|
SNP ID:
sf0611064548(Gbrowse)
Chromosome: chr06 Position: 11064548 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 68.10% | 31.90% |
| All Indica | 796 | 48.24% | 51.76% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 22.46% | 77.54% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 44.98% | 55.02% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611064548 | C->T | INTERGENIC | None |