Detailed information of SNP:
|
SNP ID:
sf0611065802(Gbrowse)
Chromosome: chr06 Position: 11065802 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 67.24% | 32.76% |
| All Indica | 791 | 46.52% | 53.48% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 21.39% | 78.61% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 209 | 43.54% | 56.46% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611065802 | T->G | INTERGENIC | None |