Detailed information of SNP:
|
SNP ID:
sf0611078430(Gbrowse)
Chromosome: chr06 Position: 11078430 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.94% | 42.06% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 496 | 13.91% | 86.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 15.57% | 84.43% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611078430 | A->G | INTERGENIC | None |