Detailed information of SNP:
|
SNP ID:
sf0611080510(Gbrowse)
Chromosome: chr06 Position: 11080510 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.42% | 46.58% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611080510 | T->C | INTERGENIC | None |