Detailed information of SNP:
|
SNP ID:
sf0611095081(Gbrowse)
Chromosome: chr06 Position: 11095081 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.46% | 46.54% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611095081 | T->A | LOC_Os06g19480(LOC_Os06g19480.1) | INTRON |