Detailed information of SNP:
|
SNP ID:
sf0611097731(Gbrowse)
Chromosome: chr06 Position: 11097731 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.50% | 47.50% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611097731 | A->G | INTERGENIC | None |