Detailed information of SNP:



SNP ID: sf0611108672(Gbrowse)

Chromosome: chr06

Position: 11108672
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1306 86.98% 13.02%
All Indica687 76.27% 23.73%
All Japonica497 99.40% 0.60%
Aus67 100.00% 0.00%
Indica I299 62.88% 37.12%
Indica II211 97.16% 2.84%
Indica Intermediate177 74.01% 25.99%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 90.24% 9.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0611108672 G->T LOC_Os06g19510(LOC_Os06g19510.1) INTRON