Detailed information of SNP:
|
SNP ID:
sf0611108672(Gbrowse)
Chromosome: chr06 Position: 11108672 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1306 | 86.98% | 13.02% |
| All Indica | 687 | 76.27% | 23.73% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 299 | 62.88% | 37.12% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 177 | 74.01% | 25.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611108672 | G->T | LOC_Os06g19510(LOC_Os06g19510.1) | INTRON |