Detailed information of SNP:
|
SNP ID:
sf0611126460(Gbrowse)
Chromosome: chr06 Position: 11126460 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 73.70% | 26.30% |
| All Indica | 787 | 54.89% | 45.11% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 32.88% | 67.12% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 206 | 53.40% | 46.60% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611126460 | G->A | INTERGENIC | None |