Detailed information of SNP:
|
SNP ID:
sf0611135922(Gbrowse)
Chromosome: chr06 Position: 11135922 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 86.77% | 13.23% |
| All Indica | 779 | 93.32% | 6.68% |
| All Japonica | 497 | 73.84% | 26.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 91.39% | 8.61% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 63.28% | 36.72% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611135922 | C->T | LOC_Os06g19560(LOC_Os06g19560.1) | INTRON |