Detailed information of SNP:
|
SNP ID:
sf0611138956(Gbrowse)
Chromosome: chr06 Position: 11138956 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.86% | 47.14% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611138956 | C->T | LOC_Os06g19560(LOC_Os06g19560.1) | INTRON |