Detailed information of SNP:
|
SNP ID:
sf0611148151(Gbrowse)
Chromosome: chr06 Position: 11148151 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 87.22% | 12.78% |
| All Indica | 777 | 94.21% | 5.79% |
| All Japonica | 493 | 73.43% | 26.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 91.36% | 8.64% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 331 | 62.54% | 37.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611148151 | C->T | INTERGENIC | None |