Detailed information of SNP:
|
SNP ID:
sf0611209887(Gbrowse)
Chromosome: chr06 Position: 11209887 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 92.73% | 7.27% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611209887 | A->T | LOC_Os06g19650(LOC_Os06g19650.1) | INTRON |