Detailed information of SNP:
|
SNP ID:
sf0611238377(Gbrowse)
Chromosome: chr06 Position: 11238377 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 62.26% | 37.74% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 467 | 7.07% | 92.93% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 315 | 3.81% | 96.19% |
| Tropical Japonica | 90 | 15.56% | 84.44% |
| Japonica Intermediate | 62 | 11.29% | 88.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611238377 | A->G | LOC_Os06g19680(LOC_Os06g19680.2) | INTRON |
| sf0611238377 | A->G | LOC_Os06g19680(LOC_Os06g19680.1) | INTRON |