Detailed information of SNP:
|
SNP ID:
sf0611254074(Gbrowse)
Chromosome: chr06 Position: 11254074 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 55.37% | 44.63% |
| All Indica | 768 | 92.97% | 7.03% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 360 | 95.56% | 4.44% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 198 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611254074 | C->T | INTERGENIC | None |