Detailed information of SNP:
|
SNP ID:
sf0611255788(Gbrowse)
Chromosome: chr06 Position: 11255788 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 61.65% | 38.35% |
| All Indica | 765 | 33.46% | 66.54% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 35.01% | 64.99% |
| Indica II | 205 | 23.90% | 76.10% |
| Indica Intermediate | 203 | 40.39% | 59.61% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611255788 | C->T | LOC_Os06g19710(LOC_Os06g19710.1) | Synonymous |