Detailed information of SNP:
|
SNP ID:
sf0611274663(Gbrowse)
Chromosome: chr06 Position: 11274663 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.69% | 40.31% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611274663 | T->G | LOC_Os06g19730(LOC_Os06g19730.1) | Non-Synonymous SNP |