Detailed information of SNP:
|
SNP ID:
sf0611289899(Gbrowse)
Chromosome: chr06 Position: 11289899 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611289899 | C->A | LOC_Os06g19740(LOC_Os06g19740.1) | INTRON |