Detailed information of SNP:
|
SNP ID:
sf0611302175(Gbrowse)
Chromosome: chr06 Position: 11302175 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.49% | 43.51% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611302175 | A->T | INTERGENIC | None |