Detailed information of SNP:
|
SNP ID:
sf0611310888(Gbrowse)
Chromosome: chr06 Position: 11310888 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 56.82% | 43.18% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611310888 | G->A | LOC_Os06g19800(LOC_Os06g19800.1) | INTRON |