Detailed information of SNP:
|
SNP ID:
sf0611317613(Gbrowse)
Chromosome: chr06 Position: 11317613 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.28% | 46.72% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611317613 | C->T | INTERGENIC | None |