Detailed information of SNP:
|
SNP ID:
sf0611321319(Gbrowse)
Chromosome: chr06 Position: 11321319 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 54.96% | 45.04% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 491 | 4.28% | 95.72% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 329 | 1.82% | 98.18% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611321319 | A->G | INTERGENIC | None |