Detailed information of SNP:
|
SNP ID:
sf0611324371(Gbrowse)
Chromosome: chr06 Position: 11324371 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.97% | 45.03% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611324371 | A->T | INTERGENIC | None |