Detailed information of SNP:
|
SNP ID:
sf0611325374(Gbrowse)
Chromosome: chr06 Position: 11325374 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.98% | 45.02% |
| All Indica | 797 | 89.34% | 10.66% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611325374 | A->G | LOC_Os06g19830(LOC_Os06g19830.1) | Synonymous |