Detailed information of SNP:
|
SNP ID:
sf0611329298(Gbrowse)
Chromosome: chr06 Position: 11329298 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.77% | 46.23% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611329298 | A->G | INTERGENIC | None |