Detailed information of SNP:
|
SNP ID:
sf0611335251(Gbrowse)
Chromosome: chr06 Position: 11335251 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.17% | 42.83% |
| All Indica | 796 | 92.21% | 7.79% |
| All Japonica | 496 | 5.85% | 94.15% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611335251 | T->C | INTERGENIC | None |