Detailed information of SNP:
|
SNP ID:
sf0611339586(Gbrowse)
Chromosome: chr06 Position: 11339586 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.75% | 46.25% |
| All Indica | 795 | 88.81% | 11.19% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611339586 | C->T | LOC_Os06g19854(LOC_Os06g19854.1) | INTRON |