Detailed information of SNP:
|
SNP ID:
sf0611341933(Gbrowse)
Chromosome: chr06 Position: 11341933 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 55.03% | 44.97% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611341933 | A->G | LOC_Os06g19854(LOC_Os06g19854.1) | INTRON |