Detailed information of SNP:
|
SNP ID:
sf0611356652(Gbrowse)
Chromosome: chr06 Position: 11356652 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611356652 | A->G | INTERGENIC | None |