Detailed information of SNP:
|
SNP ID:
sf0611388086(Gbrowse)
Chromosome: chr06 Position: 11388086 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 59.12% | 40.88% |
| All Indica | 795 | 91.70% | 8.30% |
| All Japonica | 493 | 12.98% | 87.02% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 333 | 15.32% | 84.68% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611388086 | T->G | LOC_Os06g19900(LOC_Os06g19900.1) | INTRON |