Detailed information of SNP:
|
SNP ID:
sf0611402147(Gbrowse)
Chromosome: chr06 Position: 11402147 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.12% | 47.88% |
| All Indica | 797 | 86.95% | 13.05% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611402147 | A->G | INTERGENIC | None |