Detailed information of SNP:
|
SNP ID:
sf0611412431(Gbrowse)
Chromosome: chr06 Position: 11412431 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 53.93% | 46.07% |
| All Indica | 776 | 24.61% | 75.39% |
| All Japonica | 489 | 95.91% | 4.09% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 360 | 24.72% | 75.28% |
| Indica II | 211 | 27.96% | 72.04% |
| Indica Intermediate | 205 | 20.98% | 79.02% |
| Temperate Japonica | 329 | 97.57% | 2.43% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611412431 | T->C | LOC_Os06g19930(LOC_Os06g19930.1) | Non-Synonymous SNP |