Detailed information of SNP:
|
SNP ID:
sf0611420020(Gbrowse)
Chromosome: chr06 Position: 11420020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 96.03% | 3.97% |
| All Indica | 770 | 93.38% | 6.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 358 | 94.69% | 5.31% |
| Indica II | 204 | 94.61% | 5.39% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611420020 | C->T | LOC_Os06g19940(LOC_Os06g19940.1) | INTRON |