Detailed information of SNP:
|
SNP ID:
sf0611420750(Gbrowse)
Chromosome: chr06 Position: 11420750 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 54.97% | 45.03% |
| All Indica | 796 | 90.33% | 9.67% |
| All Japonica | 489 | 3.68% | 96.32% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 329 | 3.04% | 96.96% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611420750 | G->C | LOC_Os06g19940(LOC_Os06g19940.1) | INTRON |