Detailed information of SNP:
|
SNP ID:
sf0611421033(Gbrowse)
Chromosome: chr06 Position: 11421033 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 59.78% | 40.22% |
| All Indica | 792 | 93.69% | 6.31% |
| All Japonica | 483 | 11.18% | 88.82% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 324 | 12.96% | 87.04% |
| Tropical Japonica | 91 | 6.59% | 93.41% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611421033 | A->G | LOC_Os06g19940(LOC_Os06g19940.1) | INTRON |