Detailed information of SNP:
|
SNP ID:
sf0611425473(Gbrowse)
Chromosome: chr06 Position: 11425473 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 59.28% | 40.72% |
| All Indica | 792 | 94.07% | 5.93% |
| All Japonica | 493 | 10.34% | 89.66% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 332 | 11.14% | 88.86% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611425473 | T->C | INTERGENIC | None |